RSEQtools/code

From GersteinInfo

Latest revision as of 18:21, 30 March 2015

Code

Required Software - External

1. GSL - GNU Scientific Library
2. BlatSuite - BLAT and a collection of utility programs. Note these executables have to be part of the PATH.

Download

RSEQtools consists of two libraries: BIOS, which is a general C library, and MRF (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets.

Source code

A TAR ball that contains the source code for these two components can be downloaded here:

• RSEQtools-0.6.tar.gz - Last updated on 11/05/2010
• RSEQtools-0.5.tar.gz - Initial upload

The components should be installed in the same order as listed above. Installation instructions can be found at the respective website.

Executables

Statically built binaries for UNIX and Mac OS can be found here:

• RSEQtools-0.6_UNIX.tar.gz - 64bit version, last updated on 11/05/2010
• RSEQtools-0.6_MacOs_10.6.tar.gz - MacOs 10.6, last updated on 11/05/2010

Github

All of the above tarballs are also available from Github:

• https://github.com/gersteinlab/RSEQtools.git

Important Note
==============

THIS PACKAGE (RSEQtools including BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES
OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.

License information

The software package is released under the Creative Commons license (Attribution-NonCommerical).
For more details please refer to the Permissions Page on the Gerstein Lab webpage.