FusionSeq List of programs
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(Created page with '{{FusionSeqHeader}} ==== geneFusions ==== geneFusions identifies potential fusion transcript candidates from an alignment file. '''Usage''': geneFusions prefix minNumberOf…')
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(Created page with '{{FusionSeqHeader}} ==== geneFusions ==== geneFusions identifies potential fusion transcript candidates from an alignment file. '''Usage''': geneFusions prefix minNumberOf…')
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Revision as of 17:17, 19 August 2010
User documentation main
geneFusions
geneFusions identifies potential fusion transcript candidates from an alignment file.
Usage:
geneFusions prefix minNumberOfReads
- Inputs: Takes an MRF file from STDIN
- Outputs: Reports GFR to STDOUT
- Required arguments
- prefix - the main ID of each candidate, i.e. prefix_0001, prefix_0002, etc.
- minNumberOfReads - the minimum number of reads required to include a candiate
- Optional arguments
- none
