VAT/download

From GersteinInfo

Revision as of 15:53, 8 March 2011

Code

Required Software - External

1. GSL - GNU Scientific Library
2. BlatSuite - BLAT and a collection of utility programs. Note these executables have to be part of the PATH.
3. GD library - The GD library is used to create an image for each gene model and its associated variants.
4. Tabix - Tabix is generic tool that indexes position-sorted files in tab-delimited formats to facilitate fast retrieval (download).
5. VCF tools - VCF tools consists of a suite of useful modules to manipulate VCF files.

Download

VAT suite consists of two components:

1. BIOS, which is a general C library
2. VAT, which contains the Variant Annotation Tools

Source code

A TAR ball that contains the source code can be downloaded here:

• VAT-0.5.tar.gz - Initial upload

Executables

Statically built binaries for UNIX can be found here:

• RSEQtools-0.6_UNIX.tar.gz - 64bit version, last updated on 11/05/2010

Important Note
==============

THIS PACKAGE (RSEQtools including BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES
OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.

License information

The software package is released under the Creative Commons license (Attribution-NonCommerical).
For more details please refer to the Permissions Page on the Gerstein Lab webpage.