VAT/download
From GersteinInfo
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# [http://hgwdev.cse.ucsc.edu/~kent/exe/linux/blatSuite.34.zip BlatSuite] - BLAT and a collection of utility programs. Note these executables have to be part of the PATH. | # [http://hgwdev.cse.ucsc.edu/~kent/exe/linux/blatSuite.34.zip BlatSuite] - BLAT and a collection of utility programs. Note these executables have to be part of the PATH. | ||
# [http://www.libgd.org/Main_Page GD library]: The gd library is used to create an image for each gene model and its associated variants. | # [http://www.libgd.org/Main_Page GD library]: The gd library is used to create an image for each gene model and its associated variants. | ||
| + | # [http://samtools.sourceforge.net/tabix.shtml Tabix] is generic tool that indexes position-sorted files in tab-delimited formats to facilitate fast retrieval ([http://sourceforge.net/projects/samtools/files/tabix/ download]). | ||
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Revision as of 15:45, 8 March 2011
Code
Required Software - External
- GSL - GNU Scientific Library
- BlatSuite - BLAT and a collection of utility programs. Note these executables have to be part of the PATH.
- GD library: The gd library is used to create an image for each gene model and its associated variants.
- Tabix is generic tool that indexes position-sorted files in tab-delimited formats to facilitate fast retrieval (download).
Download
RSEQtools consists of two libraries: BIOS, which is a general C library, and MRF (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets.
Source code
A TAR ball that contains the source code for these two components can be downloaded here:
- RSEQtools-0.6.tar.gz - Last updated on 11/05/2010
- RSEQtools-0.5.tar.gz - Initial upload
The components should be installed in the same order as listed above. Installation instructions can be found at the respective website.
Executables
Statically built binaries for UNIX can be found here:
- RSEQtools-0.6_UNIX.tar.gz - 64bit version, last updated on 11/05/2010
Important Note ============== THIS PACKAGE (RSEQtools including BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
License information
The software package is released under the Creative Commons license (Attribution-NonCommerical).
For more details please refer to the Permissions Page on the Gerstein Lab webpage.
