CRIT/workflow

From GersteinInfo

Revision as of 20:02, 24 January 2011 (view source) Tara (Talk | contribs) (Created page with '==Under Construction==') ← Older edit		Revision as of 20:26, 24 January 2011 (view source) Tara (Talk | contribs) Newer edit →
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-	==Under Construction==	+	==Breast Cancer Example==
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		+	===Input Data===
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		+	p-value.xls:  The binding peaks of ER using ChIP-chip download from Myles Brown's Lab at: http://research4.dfci.harvard.edu/brownlab//datasets/index.php?dir=ER_MCF7_whole_human_genome/
		+
		+	ER_putative_target_genes.txt: map peak to genes, each rows is a peak; all genes associated are listed in a single row separated using "$"
		+	VeerData-ID.txt: microarray expression data for breast cancer
		+	Veer-Info.txt: sample information
		+
		+	UNDER CONSTRUCTION

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Revision as of 20:26, 24 January 2011

Breast Cancer Example

Input Data

p-value.xls: The binding peaks of ER using ChIP-chip download from Myles Brown's Lab at: http://research4.dfci.harvard.edu/brownlab//datasets/index.php?dir=ER_MCF7_whole_human_genome/

ER_putative_target_genes.txt: map peak to genes, each rows is a peak; all genes associated are listed in a single row separated using "$" VeerData-ID.txt: microarray expression data for breast cancer Veer-Info.txt: sample information

UNDER CONSTRUCTION