RSEQtools/code
From GersteinInfo
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[http://archive.gersteinlab.org/proj/rnaseq/doc/mrf/index.html MRF] (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets. | [http://archive.gersteinlab.org/proj/rnaseq/doc/mrf/index.html MRF] (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets. | ||
| + | ==== Source code ==== | ||
A TAR ball that contains the source code for these two components can be downloaded here: | A TAR ball that contains the source code for these two components can be downloaded here: | ||
* [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.6.tar.gz RSEQtools-0.6.tar.gz] - Last updated on 11/05/2010 | * [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.6.tar.gz RSEQtools-0.6.tar.gz] - Last updated on 11/05/2010 | ||
* [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.5.tar.gz RSEQtools-0.5.tar.gz] - Initial upload | * [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.5.tar.gz RSEQtools-0.5.tar.gz] - Initial upload | ||
| + | |||
| + | ==== Executables ==== | ||
| + | Statically built binaries for UNIX and Mac OS can be found here: | ||
| + | * [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.6_UNIX.tar.gz RSEQtools-0.6_UNIX.tar.gz] - 64bit version, last updated on 11/05/2010 | ||
| + | * [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.6_MacOs_10.6.tar.gz RSEQtools-0.6_MacOs_10.6.tar.gz] - MacOs 10.6, last updated on 11/05/2010 | ||
| + | |||
<br> | <br> | ||
Revision as of 17:18, 5 November 2010
Code
Required Software - External
- GSL - GNU Scientific Library
- BlatSuite - BLAT and a collection of utility programs. Note these executables have to be part of the PATH.
Download
RSEQtools consists of two libraries: BIOS, which is a general C library, and MRF (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets.
Source code
A TAR ball that contains the source code for these two components can be downloaded here:
- RSEQtools-0.6.tar.gz - Last updated on 11/05/2010
- RSEQtools-0.5.tar.gz - Initial upload
Executables
Statically built binaries for UNIX and Mac OS can be found here:
- RSEQtools-0.6_UNIX.tar.gz - 64bit version, last updated on 11/05/2010
- RSEQtools-0.6_MacOs_10.6.tar.gz - MacOs 10.6, last updated on 11/05/2010
Installation
The components should be installed in the same order as listed above. Installation instructions can be found at the respective website.
Important Note ============== THIS PACKAGE (RSEQtools including BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
License information
The software package is released under the Creative Commons license (Attribution-NonCommerical).
For more details please refer to the Permissions Page on the Gerstein Lab webpage.
