Funseq: Difference between revisions
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==C. FunSeq tool installation== | ==C. FunSeq tool installation== | ||
FunSeq is a PERL- and Linux-based tool. At the command-line prompt, enter the following: <br> | |||
$ cd FUNSEQ/ <br> | $ cd FUNSEQ/ <br> | ||
$ perl Makefile.PL <br> | $ perl Makefile.PL <br> | ||
Revision as of 20:35, 6 May 2013
Installation
A. Required Tools
The following tools are REQUIRED for FunSeq:
1) Bedtools
2) Samtools
3) Tabix
4) VAT - A good installation guide for VAT can be found here.
B. PERL Requirement
1) Please make sure you have Perl 5 and up. Latest PERL can be downloaded here.
2) Install package Parallel::ForkManager (this package is used for parallel running). The PERL library can be found here.
C. FunSeq tool installation
FunSeq is a PERL- and Linux-based tool. At the command-line prompt, enter the following:
$ cd FUNSEQ/
$ perl Makefile.PL
$ make
$ make test
$ make install
