Overview of the 2012 ENCODE Rollout
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== Press == | == Press == | ||
| - | * '''[http://www.nytimes.com/2012/09/06/science/far-from-junk-dna-dark-matter-proves-crucial-to-health.html?pagewanted=all&_r=0 Times article] | + | * '''[http://www.nytimes.com/2012/09/06/science/far-from-junk-dna-dark-matter-proves-crucial-to-health.html?pagewanted=all&_r=0 Times article] and [http://linkstream2.gerstein.info/tag/x78qtecore/ other key articles] that describe the lab's work on the ENCODE rollout''' |
| - | * [http://linkstream2.gerstein.info/tag/prencroll0mg More articles] about the | + | * More |
| - | * [http://news.yale.edu/2012/09/05/yale-team-finds-order-amidst-chaos-within-human-genome-mom-and-dad-s-contributions-counte Yale Press Releases on ENCODE] (written by Bill Hathaway), which includes [http://archive.gersteinlab.org/mark/out/log/2012/08.28/diag/encodenets--presss-release-schematic--Diagram-4-1.pdf Schematic] showing key point of ENCODE networks analysis: annotation to hairball to interpretable hierarchy | + | ** [http://linkstream2.gerstein.info/tag/prencroll0mg More articles] about the rollout (including a [http://linkstream2.gerstein.info/tag/x78qtenc subset of them] specifically mentioning the lab) and a comprehensive [http://blog.openhelix.eu/?p=13613 OpenHelix Blog] entry that has lots of annotated press links |
| - | * Article about how CT is aiming to become a genomics hub; adjacent to the story was [http://archive.gersteinlab.org/mark/out/log/2012/09.29/pic/Courant-Genomics-Timeline-photo.JPG a timeline highlighting the major genomic achievements in the state]. | + | ** [http://news.yale.edu/2012/09/05/yale-team-finds-order-amidst-chaos-within-human-genome-mom-and-dad-s-contributions-counte Yale Press Releases on ENCODE] (written by Bill Hathaway), which includes [http://archive.gersteinlab.org/mark/out/log/2012/08.28/diag/encodenets--presss-release-schematic--Diagram-4-1.pdf Schematic] showing key point of ENCODE networks analysis: annotation to hairball to interpretable hierarchy |
| - | * [http://archive.gersteinlab.org/mark/out/log/2012/09.09/encoderollout-PR/P038MAD_SOC06092012038_1.pdf Article in Spanish] on the rollout. | + | * Misc |
| + | ** Article about how CT is aiming to become a genomics hub; adjacent to the story was [http://archive.gersteinlab.org/mark/out/log/2012/09.29/pic/Courant-Genomics-Timeline-photo.JPG a timeline highlighting the major genomic achievements in the state]. | ||
| + | ** [http://archive.gersteinlab.org/mark/out/log/2012/09.09/encoderollout-PR/P038MAD_SOC06092012038_1.pdf Article in Spanish] on the rollout. | ||
== Talks == | == Talks == | ||
Revision as of 04:00, 10 October 2012
The rollout for the ENCODE consortium (Human Genome Annotation) papers occurred in early fall 2012. This was the culmination of a decade of work in the ENCODE scaleup, the ENCODE pilot project, and modENCODE.
Contents |
Papers
- Papers related to the actual ENCODE rollout
http://papers.gersteinlab.org/subject/encoderollout
- Listing of ENCODE and modENCODE "rollout" papers from the ENCODE pilot and modENCODE rollouts
http://papers.gersteinlab.org/subject/encodecore
- Other ENCODE associated papers
http://papers.gersteinlab.org/subject/otherencodepapers
- Gencode Pseudogene work
http://papers.gersteinlab.org/subject/encode-pgenes
Press
- Times article and other key articles that describe the lab's work on the ENCODE rollout
- More
- More articles about the rollout (including a subset of them specifically mentioning the lab) and a comprehensive OpenHelix Blog entry that has lots of annotated press links
- Yale Press Releases on ENCODE (written by Bill Hathaway), which includes Schematic showing key point of ENCODE networks analysis: annotation to hairball to interpretable hierarchy
- Misc
- Article about how CT is aiming to become a genomics hub; adjacent to the story was a timeline highlighting the major genomic achievements in the state.
- Article in Spanish on the rollout.
Talks
- Slide pack on networks and pseudogenes (pdf & ppt):
- Another slide pack containing information on statistical models relating output expression to genomic inputs (pdf & ppt):
- Finally, here's a link to the modENCODE symposium, which has a video
containing bits of the talks above: http://lectures.gersteinlab.org/summary/Insights_from_Worm_modENCODE_Human_Applicable--i0modsymp-20120620/
Subway Map
We have created a subway map figure showing the overall collaboration in the consortium. There are now coauthor networks labeled/colored by both country and state.
http://homes.gersteinlab.org/people/rar62/subwaymap/SubwayMap8_16_12.pdf
https://docs.google.com/spreadsheet/ccc?key=0AvRr07RHaF5cdFZlOFJ1YmdOT2pUM1VEODM1bE5CRHc#gid=0
Easy to Read Introductory Papers
http://papers.gersteinlab.org/papers/sciam2
http://papers.gersteinlab.org/papers/amsci
Grants
We had 3 NIH ENCODE grants :
GENCODE (NIH-encode-pgenes): http://papers.gersteinlab.org/subject/encode-pgenes
The DAC (NIH-encode-DAC): http://projectreporter.nih.gov/project_info_description.cfm?aid=8107695
The ENCODE "chip center" (NIH-encode-chip) : http://projectreporter.nih.gov/project_info_description.cfm?aid=8325805
In addition the original pilot grant : http://papers.gersteinlab.org/subject/encode + http://encode.gersteinlab.org
