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<A CLASS="image" HREF="http://molmovdb.org/molmovdb/morph">
<IMG SRC="./images/morph-icon.jpg" ALT="Morph Server"></A>
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The <A CLASS="resource"
HREF="http://molmovdb.org/molmovdb/morph">Morph Server</A>
generates
a plausible pathway between two conformations of a protein or nucleic acid
structure.
A large number of statistics and several high-quality movies are
output.
[ <A HREF="/papers/morphs-nar">citation 1</A> | <A
HREF="/papers/molmovdb2">citation2</A> |
<A HREf="/papers/subject/motions">related</A> ]
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<A CLASS="image" HREF="http://bioinfo.mbb.yale.edu/ExpressYourself">
<IMG SRC="./images/express-logo.png" ALT="ExpressYourself"></A>
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<A CLASS="resource" HREF="http://bioinfo.mbb.yale.edu/ExpressYourself">ExpressYourself</A> is an
interactive platform for
background correction, normalization, scoring, and quality assessment of
raw microarray data.
[ <A HREf="/papers/expressyourself">citation</A> ]
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<A CLASS="image" HREF="http://spine.nesg.org">
<IMG SRC="./images/spine-icon.jpg" ALT="SPINE"></A>
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<A CLASS="resource" HREF="http://spine.nesg.org">SPINE</A> is our
laboratory-information management
system (LIMS) for the <A CLASS="resource"
HREf="http://www.nesg.org">NorthEast Structural Genomics
Consortium</A>. The online version is restricted to consortium users, but
most of the code is
freely available for download.
[ <A HREF="/papers/spine-nar">citation1</A> | <A
HREF="/papers/spine2-nar">citation2</A> ]
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<A CLASS="image" HREF="http://pseudogene.org">
<IMG SRC="./images/pseudogene.png" ALT="Pseudogenes"></A>
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<a class="resource" href="http://pseudogene.org">Pseudogene.org</a>
is a collection of resources related to our efforts to survey
eukaryotic genomes for pseudogene sequences, "pseudo-fold" usage,
amino-acid composition, and single-nucleotide polymorphisms (SNPs) to help
elucidate the relationships between pseudogene families across several
organisms.
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<A CLASS="image" HREF="http://tiling.gersteinlab.org/">
<IMG SRC="./images/tiling.png" ALT="Tiling"></A>
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<a class="resource" href="http://tiling.gersteinlab.org/">Tiling</a>
is under construction.
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<A CLASS="image" HREF="http://networks.gersteinlab.org/genome/interactions/networks/">
<IMG SRC="./images/topnet.png" ALT="TopNet"></A>
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<a class="resource" href="http://networks.gersteinlab.org/genome/interactions/networks/">TopNet</a>
is an automated web tool designed to calculate topological
parameters and compare different sub-networks for any given network.
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<A CLASS="image" HREF="http://geometry.molmovdb.org">
<IMG SRC="./images/volume.png" ALT="Protein Geometry"></A>
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A number of programs for calculating properties of protein and nucleic
acid structures have
been collected into a <A CLASS="resource"
HREF="http://geometry.molmovdb.org">single
distribution</A>. Included are a library of utility functions for dealing
with structures,
and a convenient interactive command-line interpreter.
[ <A HREF="/papers/subject/volumes">related papers</A> ]
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<A CLASS="image" HREF="http://bioinfo.mbb.yale.edu/expression/cluster">
<IMG SRC="./images/timeshift.png" ALT="Local Clustering"></A>
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A new algorithm for <A CLASS="resource" HREF="http://bioinfo.mbb.yale.edu/expression/cluster">local
clustering of expression data</A> to find timeshifted and/or inverted
relationships is available as C source code.
[ <A HREF="/papers/timeshift-jmb">citation</A> ]
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<A CLASS="image" HREF="/papers/xml/">
<IMG SRC="./images/papers.png" ALT="Papers"></A>
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The <A CLASS="resource" HREF="/papers">publication listings</A> on our
site are automatically
generated based on data from the NCBI and local annotations stored in XML
format. The <A CLASS="resource" HREF="/papers/xml">code</A> which does
this is freely available
(some modification will be required for other sites).
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