NCVAR

From GersteinInfo

Revision as of 15:11, 19 April 2011 (view source) Xm24 (Talk | contribs) ← Older edit		Revision as of 15:11, 19 April 2011 (view source) Xm24 (Talk | contribs) Newer edit →
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	DNase		DNase
-	Gene 874 0.87 6.96E-09 0.89	+	Gene 874 0.87 6.96E-09
-	CDS 4 0.04 3.47E-24 0.04	+	CDS 4 0.04 3.47E-24
-	5'UTR Only 92 0.95 3.11E-01 0.95	+	5'UTR Only 92 0.95 3.11E-01
-	3'UTR Only 10 0.46 6.16E-03 0.50	+	3'UTR Only 10 0.46 6.16E-03
-	Intron Only 653 0.99 3.57E-01 1.02	+	Intron Only 653 0.99 3.57E-01
-	Whole CDS(s) 0 0.00 1.24E-14 0.00	+	Whole CDS(s) 0 0.00 1.24E-14
-	Partial CDS(s) 4 0.09 1.17E-10 0.09	+	Partial CDS(s) 4 0.09 1.17E-10
-	Whole Gene(s) 0 0.00 2.34E-01 0.00	+	Whole Gene(s) 0 0.00 2.34E-01
-	Partial Gene(s) 874 0.87 7.75E-09 0.89	+	Partial Gene(s) 874 0.87 7.75E-09
-	Single whole gene 0 0.00 2.37E-01 0.00	+	Single whole gene 0 0.00 2.37E-01
-	Multiple whole genes 0 0.00 4.56E-01 0.00	+	Multiple whole genes 0 0.00 4.56E-01
-	2 whole genes 0 0.00 4.58E-01 0.00	+	2 whole genes 0 0.00 4.58E-01
-	3 whole genes 0 0.00 4.89E-01 0.00	+	3 whole genes 0 0.00 4.89E-01

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Revision as of 15:11, 19 April 2011

Specificity of TF-binding sites and the DNase sites files downloaded from the UCSC genome browser

TF motif	track	group	cell line	link
CTCF		Open Chromatin	Regulation	GM12878	download
STAT1	Yale TFBS	Regulation	Hela-S3 (IFNr 30min)	download
NFkB	Yale TFBS	Regulation	GM12878	download
c-Myc	Yale TFBS	Regulation	K562	download
c-Fos	Yale TFBS	Regulation	K562	download
c-Jun	Yale TFBS	Regulation	K562	download
JunD	Yale TFBS	Regulation	K562	download
PolII
DNase

Gene 874 0.87 6.96E-09 CDS 4 0.04 3.47E-24 5'UTR Only 92 0.95 3.11E-01 3'UTR Only 10 0.46 6.16E-03 Intron Only 653 0.99 3.57E-01 Whole CDS(s) 0 0.00 1.24E-14 Partial CDS(s) 4 0.09 1.17E-10 Whole Gene(s) 0 0.00 2.34E-01 Partial Gene(s) 874 0.87 7.75E-09 Single whole gene 0 0.00 2.37E-01 Multiple whole genes 0 0.00 4.56E-01 2 whole genes 0 0.00 4.58E-01 3 whole genes 0 0.00 4.89E-01