Encode3rollout
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| - | The ENCODE project has been extended to model organisms, particularly the mouse. Through the third phase of ENCODE (ENCODE 3) nearly a million and more than 300K cCRE annotations have been generated for human and mouse, respectively, and these have provided a valuable resource for the scientific community. The rollout for the ENCODE consortium phase 3 papers occurred in 7/29/2020. The Gerstein lab is associated with 9 papers ( | + | The ENCODE project has been extended to model organisms, particularly the mouse. Through the third phase of ENCODE (ENCODE 3) nearly a million and more than 300K cCRE annotations have been generated for human and mouse, respectively, and these have provided a valuable resource for the scientific community. The rollout for the ENCODE consortium phase 3 papers occurred in 7/29/2020. The Gerstein lab is associated with 9 papers (6 core and 3 companion papers). |
* Paper Summary http://papers.gersteinlab.org/subject/encode3rollout/index.html | * Paper Summary http://papers.gersteinlab.org/subject/encode3rollout/index.html | ||
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== Core Papers == | == Core Papers == | ||
| - | * Perspectives on ENCODE (https://doi.org/10.1038/s41586-020-2449-8) | + | * Perspectives on ENCODE http://papers.gersteinlab.org/papers/encode3perspective/index.html (https://doi.org/10.1038/s41586-020-2449-8) |
| - | * Expanded Encyclopedias of DNA Elements in the Human and Mouse Genomes (https://doi.org/10.1038/s41586-020-2493-4) | + | * Expanded Encyclopedias of DNA Elements in the Human and Mouse Genomes http://papers.gersteinlab.org/papers/encode3main/index.html (https://doi.org/10.1038/s41586-020-2493-4) |
* ENCODEC http://papers.gersteinlab.org/papers/encodec/index.html (https://www.nature.com/articles/s41467-020-14743-w) | * ENCODEC http://papers.gersteinlab.org/papers/encodec/index.html (https://www.nature.com/articles/s41467-020-14743-w) | ||
* RADAR http://papers.gersteinlab.org/papers/radar/index.html (https://doi.org/10.1186/s13059-020-01979-4) | * RADAR http://papers.gersteinlab.org/papers/radar/index.html (https://doi.org/10.1186/s13059-020-01979-4) | ||
Latest revision as of 23:19, 31 July 2020
Contents |
Gerstein Lab publications for ENCODE 3 rollout
The ENCODE project has been extended to model organisms, particularly the mouse. Through the third phase of ENCODE (ENCODE 3) nearly a million and more than 300K cCRE annotations have been generated for human and mouse, respectively, and these have provided a valuable resource for the scientific community. The rollout for the ENCODE consortium phase 3 papers occurred in 7/29/2020. The Gerstein lab is associated with 9 papers (6 core and 3 companion papers).
Nature Special Issue
- Landing Page https://www.nature.com/immersive/d42859-020-00027-2/index.html
- Collections Page https://www.nature.com/collections/dggcchgghg
- Additional Research Papers https://www.nature.com/collections/dggcchgghg/additional-research-papers
- ENCODE Portal Publications Page https://www.encodeproject.org/publications/
Core Papers
- Perspectives on ENCODE http://papers.gersteinlab.org/papers/encode3perspective/index.html (https://doi.org/10.1038/s41586-020-2449-8)
- Expanded Encyclopedias of DNA Elements in the Human and Mouse Genomes http://papers.gersteinlab.org/papers/encode3main/index.html (https://doi.org/10.1038/s41586-020-2493-4)
- ENCODEC http://papers.gersteinlab.org/papers/encodec/index.html (https://www.nature.com/articles/s41467-020-14743-w)
- RADAR http://papers.gersteinlab.org/papers/radar/index.html (https://doi.org/10.1186/s13059-020-01979-4)
- MatchFilter http://papers.gersteinlab.org/papers/matchfilter/index.html (https://www.nature.com/articles/s41592-020-0907-8)
- Mouse Pseudogene http://papers.gersteinlab.org/papers/mspgenes/index.html (https://www.nature.com/articles/s41467-020-17157-w)
Companion Papers
- ESPRNN http://papers.gersteinlab.org/papers/esprnn/index.html
- DINER http://papers.gersteinlab.org/papers/diner/index.html
- TopicNet http://papers.gersteinlab.org/papers/tfmem/index.html
Lectures & Images
News & Media Coverage
- Yale News (https://news.yale.edu/2020/07/30/insights-outcomes-new-spin-quantum-research-and-biology-sex)
- NHGRI News (https://www.genome.gov/news/news-release/NHGRI-funded-project-creates-encyclopedia-detailing-inner-workings-of-human-and-mouse-genomes)
- Nature News and Views (https://www.nature.com/articles/d41586-020-02139-1)
Figures & Videos
- Figures on ENCODE3 rollout (Google Slide)
- ENCODEC Network Rewiring (YouTube link) (Source)
- ENCODEC Figure Evolution (YouTube link) (Source)
