Resources Related to Hierarchies

From GersteinInfo

Revision as of 18:57, 8 October 2013 (view source) Mbg (Talk | contribs) (Created page with 'http://papers.gersteinlab.org/papers/hier-rewiring http://papers.gersteinlab.org/papers/nethier ---------- Forwarded message ---------- From: Mark Gerstein <mark@gersteinlab.or…') ← Older edit		Latest revision as of 03:51, 10 October 2013 (view source) Public (Talk | contribs)
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-	http://papers.gersteinlab.org/papers/hier-rewiring	+	We have investigated the hierarchical organization of networks in a series of publications.
-	http://papers.gersteinlab.org/papers/nethier	+
		+	Human hierarchy based on ChIP-Seq data from ENCODE
		+	http://papers.gersteinlab.org/papers/encodenets
		+	http://encodenets.gersteinlab.org/
-	---------- Forwarded message ----------	+	Worm and Fly hierarchies constructed from modENCODE ChIP-Seq data
-	From: Mark Gerstein <mark@gersteinlab.org>	+	http://papers.gersteinlab.org/papers/mirnet
-	Date: Fri, Sep 27, 2013 at 2:03 PM	+	http://papers.gersteinlab.org/papers/wormawg
-	Subject: Re: Yeast Network Hirearchy	+
-	To: "Windram, Oliver P F" <o.windram@imperial.ac.uk>	+
-	Cc: Haiyuan Yu <haiyuan.yu@cornell.edu>, Nitin Bhardwaj <nbhardwaj@gmail.com>, "faqtraffic+mg@gersteinlab.org" <faqtraffic+mg@gersteinlab.org>, Chao Cheng <chao.cheng@yale.edu>, Koon-Kiu Yan <koon-kiu.yan@yale.edu>, Ql * Lab * x57l <x57l@gersteinlab.org>	+
		+	Collaboration between middle level regulators in a hierarchy
		+	http://papers.gersteinlab.org/papers/nethier
		+	http://info.gersteinlab.org/Hierarchy
-	Hi,	+	Rewiring in hierarchy
-		+	http://papers.gersteinlab.org/papers/hier-rewiring
-	thanks for your interest. We're very interested in network hierarchy	+	http://info.gersteinlab.org/Rewiring_hierarchy
-	and I'm going to work on making our hierarchies available readily on	+
-	the web.	+
-		+
-	Some one will write back in a bit with thoughts.	+
-		+
-	Until then you might find the following links useful :	+
		+	Hierarchy in Yeast transcriptional regulatory network
		+	http://papers.gersteinlab.org/papers/nethierarchy/
	http://www.gersteinlab.org/proj/nethierarchy		http://www.gersteinlab.org/proj/nethierarchy
-	http://papers.gersteinlab.org/papers/nethierarchy/
-	website with an earlier version of the yeast hierarchy.
-
-	http://papers.gersteinlab.org/papers/mirnet
-	http://papers.gersteinlab.org/papers/wormawg
-	information on worm & fly hierarchies
-
-	http://papers.gersteinlab.org/papers/encodenets
-	Human hierarchy
		+	Bacterial hierarchy and call graph
	http://papers.gersteinlab.org/papers/callgraph		http://papers.gersteinlab.org/papers/callgraph
-	Bacterial hierarchy	+	http://archive.gersteinlab.org/proj/call_graph/Genome_and_OS.html

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Latest revision as of 03:51, 10 October 2013

We have investigated the hierarchical organization of networks in a series of publications.

Human hierarchy based on ChIP-Seq data from ENCODE http://papers.gersteinlab.org/papers/encodenets http://encodenets.gersteinlab.org/

Worm and Fly hierarchies constructed from modENCODE ChIP-Seq data http://papers.gersteinlab.org/papers/mirnet http://papers.gersteinlab.org/papers/wormawg

Collaboration between middle level regulators in a hierarchy http://papers.gersteinlab.org/papers/nethier http://info.gersteinlab.org/Hierarchy

Rewiring in hierarchy http://papers.gersteinlab.org/papers/hier-rewiring http://info.gersteinlab.org/Rewiring_hierarchy

Hierarchy in Yeast transcriptional regulatory network http://papers.gersteinlab.org/papers/nethierarchy/ http://www.gersteinlab.org/proj/nethierarchy

Bacterial hierarchy and call graph http://papers.gersteinlab.org/papers/callgraph http://archive.gersteinlab.org/proj/call_graph/Genome_and_OS.html