NCVAR
From GersteinInfo
(Difference between revisions)
| (21 intermediate revisions not shown) | |||
| Line 1: | Line 1: | ||
| - | + | Supplemental Data Related to: | |
| - | CTCF | + | Mu et al. [http://papers.gersteinlab.org/papers/ncvar "Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project,"] NAR (2011) |
| - | STAT1 | + | |
| + | Specifications for TF-binding sites and DNase sites files downloaded from the UCSC genome browser | ||
| + | |||
| + | '''TF motif''' '''track''' '''group''' '''cell line''' '''link''' | ||
| + | DNase Open Chromatin Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeDukeDNaseSeqPeaksGm12878V3.narrowPeak.gz wgEncodeDukeDNaseSeqPeaksGm12878V3] | ||
| + | CTCF Open Chromatin Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeChromatinMap/wgEncodeUtaChIPseqPeaksGm12878CtcfV3.narrowPeak.gz wgEncodeUtaChIPseqPeaksGm12878CtcfV3] | ||
| + | STAT1 Yale TFBS Regulation Hela-S3 (IFNr 30min) [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksHelas3ifngStat1.narrowPeak.gz wgEncodeYaleChIPseqPeaksHelas3ifngStat1] | ||
| + | NFkB Yale TFBS Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa.narrowPeak.gz wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa] | ||
| + | c-Myc Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CmycV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CmycV2] | ||
| + | c-Fos Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CfosV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CfosV2] | ||
| + | c-Jun Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562CjunV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562CjunV2] | ||
| + | JunD Yale TFBS Regulation K562 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksK562JundV2.narrowPeak.gz wgEncodeYaleChIPseqPeaksK562JundV2] | ||
| + | PolII Yale TFBS Regulation GM12878 [http://hgdownload.cse.ucsc.edu/goldenPath/hg18/encodeDCC/wgEncodeYaleChIPseq/wgEncodeYaleChIPseqPeaksGm12878Pol2V2.narrowPeak.gz wgEncodeYaleChIPseqPeaksGm12878Pol2V2] | ||
Latest revision as of 02:13, 11 September 2011
Supplemental Data Related to:
Mu et al. "Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project," NAR (2011)
Specifications for TF-binding sites and DNase sites files downloaded from the UCSC genome browser
TF motif track group cell line link DNase Open Chromatin Regulation GM12878 wgEncodeDukeDNaseSeqPeaksGm12878V3 CTCF Open Chromatin Regulation GM12878 wgEncodeUtaChIPseqPeaksGm12878CtcfV3 STAT1 Yale TFBS Regulation Hela-S3 (IFNr 30min) wgEncodeYaleChIPseqPeaksHelas3ifngStat1 NFkB Yale TFBS Regulation GM12878 wgEncodeYaleChIPseqPeaksGm12878NfkbTnfa c-Myc Yale TFBS Regulation K562 wgEncodeYaleChIPseqPeaksK562CmycV2 c-Fos Yale TFBS Regulation K562 wgEncodeYaleChIPseqPeaksK562CfosV2 c-Jun Yale TFBS Regulation K562 wgEncodeYaleChIPseqPeaksK562CjunV2 JunD Yale TFBS Regulation K562 wgEncodeYaleChIPseqPeaksK562JundV2 PolII Yale TFBS Regulation GM12878 wgEncodeYaleChIPseqPeaksGm12878Pol2V2
