Overview of the 2018 PsychENCODE Rollout

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The rollout for the PsychENCODE consortium papers occurred in 2018.
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== Introductory papers ==
== Introductory papers ==
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== Papers ==
== Papers ==
*Adult Capstone - [http://papers.gersteinlab.org/papers/30545857/index.html '''Comprehensive functional genomic resource and integrative model for the human brain''']  
*Adult Capstone - [http://papers.gersteinlab.org/papers/30545857/index.html '''Comprehensive functional genomic resource and integrative model for the human brain''']  
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**'''One page summary''': [https://www.dropbox.com/s/z3rotgy5nx5hrg7/aat8464_summary_revised.pdf?dl=0 '''Proofs'''], [http://files.gersteinlab.org/public-docs/2018/11.20/capstone4-summary-text.pdf Text], [http://files.gersteinlab.org/public-docs/2018/12.05/capstone4-summary-graphic-Screenshot.png Figure]
 
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**Fun pics of  cell-type specfic regulatory networks, based on single-cell data ([https://www.dropbox.com/s/ttnoefsjmux79kn/celltype_GRN_forpress.jpg?dl=0 Big JPEG Wheel]) ([http://files.gersteinlab.org/public-docs/2018/12.05/CellType_Rasterized.pdf PDF blow-ups])
 
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**Lectures on the Adult Capstone: [http://lectures.gersteinlab.org/summary/Using-population-scale-functional-genomics-mental-disease-n-exploiting-data-exhaust-20181025-i0sigma/ i0sigma], [http://lectures.gersteinlab.org/summary/Pop-scale-genomics-for-mental-disease-n-privacy-risks--20180921-i0mssm18/ i0mssm18]
 
**[http://resource.psychencode.org/ '''Resource'''.psychencode.org]
**[http://resource.psychencode.org/ '''Resource'''.psychencode.org]
*Developmental Capstone - [http://papers.gersteinlab.org/papers/30545854/index.html '''Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk''']
*Developmental Capstone - [http://papers.gersteinlab.org/papers/30545854/index.html '''Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk''']
**[http://development.psychencode.org/ Development.psychencode.org] & [http://brainspan.org/ BrainSpan.org]
**[http://development.psychencode.org/ Development.psychencode.org] & [http://brainspan.org/ BrainSpan.org]
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*Disorder Capstone - [http://papers.gersteinlab.org/papers/30545856/index.html '''Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder''']
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**[http://resource.psychencode.org/ '''Resource'''.psychencode.org]
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*[http://papers.gersteinlab.org/papers/30545853/index.html '''Transcriptome and epigenome landscape of human cortical development modeled in brain organoids''']
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* [http://www.psychencode.org/?page_id=227 '''Other PsychENCODE papers''']
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* [http://science.sciencemag.org/content/362/6420 The Science Cover]
== Press ==
== Press ==
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* [https://www.nytimes.com/2018/12/13/health/genetics-brain-autism-schizophrenia.html NY Times - Mapping the Brain’s Genetic Landscape]
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* [https://www.sciencenews.org/article/big-data-how-when-where-mental-disorders-start-brain Science News - PsychENCODE hints at the genetic origins of mental disorders]
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* [https://www.nature.com/articles/d41586-018-07750-x Nature News - Huge brain study uncovers ‘buried’ genetic networks linked to mental illness]
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* [https://news.yale.edu/2018/12/13/developing-brain-scientists-find-roots-neuropsychiatric-diseases Yale News - In the developing brain, scientists find roots of neuropsychiatric diseases]
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* [https://www.genomeweb.com/sequencing/psychencode-studies-explore-brain-development-neuropsychiatric-regulatory-features#.XBRjaxNKgWo GenomeWeb - PsychENCODE Studies Explore Brain Development, Neuropsychiatric Regulatory Features]
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* [https://www.upi.com/Health_News/2018/12/14/Genetic-analysis-reveals-brain-changes-that-lead-to-mental-illness/3051544806383/ UPI.com - Genetic analysis reveals brain changes that lead to mental illness]
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* [https://www.scientificamerican.com/article/huge-brain-study-uncovers-buried-genetic-networks-linked-to-mental-illness/ Scientific American - Huge Brain Study Uncovers “Buried” Genetic Networks Linked to Mental Illness]
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* [https://www.the-scientist.com/news-opinion/analysis-of-2-000-brains-provides-clues-to-schizophrenia--autism-65210 The Scientist Magazine(R) - Analysis of 2,000 Brains Provides Clues to Schizophrenia, Autism]
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* [https://www.axios.com/mapping-brain-genes-how-psychiatric-diseases-may-start-e2e3075b-0e63-4007-a153-759c3cd5c8ba.html Axios - Mapping the brain to see how diseases may start]
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* [https://www.statnews.com/2018/12/13/2000-brains-origins-of-psychiatric-diseases/ STAT - With data from 2,000 brains, studies explore psychiatric diseases]
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* [https://medicalxpress.com/news/2018-12-uncover-molecular-mechanisms-linked-autism.html Medicalxpress.com - Researchers uncover molecular mechanisms linked to autism and schizophrenia]
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* [https://www.spectrumnews.org/news/massive-analysis-refines-map-autisms-genetic-roots/ Spectrum - Massive analysis refines map of autism’s genetic roots]
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== Talks ==
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*Lectures on the Adult Capstone: [http://lectures.gersteinlab.org/summary/Using-population-scale-functional-genomics-mental-disease-n-exploiting-data-exhaust-20181025-i0sigma/ i0sigma], [http://lectures.gersteinlab.org/summary/Pop-scale-genomics-for-mental-disease-n-privacy-risks--20180921-i0mssm18/ i0mssm18], [http://lectures.gersteinlab.org/summary/Func-genomics-suggest-drug-targets-n-building-hybrid-classifier--20190401-i0brd19 i0brd19]
== Grants ==
== Grants ==
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* For current PsychENCODE rollout, we are supported by several [http://www.psychencode.org/?page_id=441 NIMH grants]

Latest revision as of 03:06, 31 March 2019

The rollout for the PsychENCODE consortium papers occurred in 2018.

Contents

Introductory papers

Papers

Press

Talks

Grants

  • For current PsychENCODE rollout, we are supported by several NIMH grants
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