Even more tools: Difference between revisions

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A resource may be produced without actually being published. Source code for such resources is archived through this page.
:{|class="wikitable sortable" border="1" cellspacing="0" cellpadding="10"
:{|class="wikitable sortable" border="1" cellspacing="0" cellpadding="10"
|- bgcolor="lightsteelblue"
|- bgcolor="lightsteelblue"
!Tool Name!!Release Date!!class="unsortable"|Description
!Tool Name!!Project Date!!class="unsortable"|Description
|-style="height: 100px;"
|-style="height: 100px;"
|style="width:15%; text-align:center;"|[http://yeasthub.gersteinlab.org '''Yeasthub''']||style="width:7%; text-align:center;"|1997||A semantic web-based application which demonstrates how a life sciences data warehouse can be built using a native Resource Description Framework (RDF) data store. This data warehouse allows integration of different types of yeast genome data provided by different resources in different formats including the tabular and RDF formats.
|style="width:15%; text-align:center;"|[https://www.encodeproject.org/comparative/ '''CAPE''']||style="width:7%; text-align:center;"|2014||The transcriptome is the readout of the genome. Identifying common features in it across distant species can reveal fundamental principles. To this end, the ENCODE and modENCODE consortia have generated large amounts of matched RNA-sequencing data for human, worm and fly. Uniform processing and comprehensive annotation of these data allow comparison across metazoan phyla, extending beyond earlier within-phylum transcriptome comparisons and revealing ancient, conserved features.
|-style="height: 100px;"
|style="text-align: center;"|[http://code.google.com/p/lesseq/ '''LESSeq''']<br>[http://github.gersteinlab.org/LESSeq/ Github repo]||style="text-align:center;"|2014||Local Event-based analysis of alternative Splicing using RNA-Seq
|}
|}

Latest revision as of 19:57, 11 May 2016

A resource may be produced without actually being published. Source code for such resources is archived through this page.

Tool Name Project Date Description
CAPE 2014 The transcriptome is the readout of the genome. Identifying common features in it across distant species can reveal fundamental principles. To this end, the ENCODE and modENCODE consortia have generated large amounts of matched RNA-sequencing data for human, worm and fly. Uniform processing and comprehensive annotation of these data allow comparison across metazoan phyla, extending beyond earlier within-phylum transcriptome comparisons and revealing ancient, conserved features.
LESSeq
Github repo		 2014 Local Event-based analysis of alternative Splicing using RNA-Seq
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