RSEQtools/code
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(Difference between revisions)
(Created page with '<center>[http://archive.gersteinlab.org/proj/rnaseq/rseqtools '''RSEQtools Main Page''']</center> __NOTOC__ == Code == === Required Software - External === # [http://www.gnu.…') |
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[http://archive.gersteinlab.org/proj/rnaseq/doc/mrf/index.html MRF] (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets. | [http://archive.gersteinlab.org/proj/rnaseq/doc/mrf/index.html MRF] (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets. | ||
| - | A TAR ball that contains these two components can be downloaded [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0. | + | ==== Source code ==== |
| - | + | A TAR ball that contains the source code for these two components can be downloaded here: | |
| - | + | * [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.6.tar.gz RSEQtools-0.6.tar.gz] - Last updated on 11/05/2010 | |
| + | * [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.5.tar.gz RSEQtools-0.5.tar.gz] - Initial upload | ||
| + | The components should be installed in the same order as listed above. Installation instructions can be found at the respective website. | ||
| - | + | ==== Executables ==== | |
| + | Statically built binaries for UNIX and Mac OS can be found here: | ||
| + | * [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.6_UNIX.tar.gz RSEQtools-0.6_UNIX.tar.gz] - 64bit version, last updated on 11/05/2010 | ||
| + | * [http://archive.gersteinlab.org/proj/rnaseq/rseqtools/RSEQtools-0.6_MacOs_10.6.tar.gz RSEQtools-0.6_MacOs_10.6.tar.gz] - MacOs 10.6, last updated on 11/05/2010 | ||
| - | === | + | ==== Github ==== |
| - | + | All of the above tarballs are also available from Github: | |
| - | + | * [https://github.com/gersteinlab/RSEQtools.git https://github.com/gersteinlab/RSEQtools.git] | |
<pre> | <pre> | ||
| Line 31: | Line 36: | ||
============== | ============== | ||
| - | THIS PACKAGE (BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY | + | THIS PACKAGE (RSEQtools including BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED |
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES | WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES | ||
| - | OF | + | OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. |
</pre> | </pre> | ||
| - | + | <br> | |
| + | |||
| + | === License information === | ||
| + | |||
| + | The software package is released under the [http://creativecommons.org/licenses/by-nc/2.5/legalcode Creative Commons license (Attribution-NonCommerical)]. <br> | ||
| + | For more details please refer to the [http://www.gersteinlab.org/misc/permissions.html Permissions Page] on the Gerstein Lab webpage. | ||
Latest revision as of 18:21, 30 March 2015
Code
Required Software - External
- GSL - GNU Scientific Library
- BlatSuite - BLAT and a collection of utility programs. Note these executables have to be part of the PATH.
Download
RSEQtools consists of two libraries: BIOS, which is a general C library, and MRF (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets.
Source code
A TAR ball that contains the source code for these two components can be downloaded here:
- RSEQtools-0.6.tar.gz - Last updated on 11/05/2010
- RSEQtools-0.5.tar.gz - Initial upload
The components should be installed in the same order as listed above. Installation instructions can be found at the respective website.
Executables
Statically built binaries for UNIX and Mac OS can be found here:
- RSEQtools-0.6_UNIX.tar.gz - 64bit version, last updated on 11/05/2010
- RSEQtools-0.6_MacOs_10.6.tar.gz - MacOs 10.6, last updated on 11/05/2010
Github
All of the above tarballs are also available from Github:
Important Note ============== THIS PACKAGE (RSEQtools including BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
License information
The software package is released under the Creative Commons license (Attribution-NonCommerical).
For more details please refer to the Permissions Page on the Gerstein Lab webpage.
