RSEQtools/code
From GersteinInfo
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[http://archive.gersteinlab.org/proj/rnaseq/doc/mrf/index.html MRF] (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets. | [http://archive.gersteinlab.org/proj/rnaseq/doc/mrf/index.html MRF] (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets. | ||
| - | ==== Source code ==== | + | ==== Source code & Executables ==== |
| - | A TAR ball that contains the source code for these two components can be | + | A TAR ball that contains the source code for these two components, as well as statically built binaries for UNIX and Mac OS, can be found in RSEQtools' Github repository, which can be cloned from the following URL: |
| - | * [ | + | * [https://github.com/gersteinlab/RSEQtools.git https://github.com/gersteinlab/RSEQtools.git] |
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The components should be installed in the same order as listed above. Installation instructions can be found at the respective website. | The components should be installed in the same order as listed above. Installation instructions can be found at the respective website. | ||
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Revision as of 17:10, 24 March 2015
Code
Required Software - External
- GSL - GNU Scientific Library
- BlatSuite - BLAT and a collection of utility programs. Note these executables have to be part of the PATH.
Download
RSEQtools consists of two libraries: BIOS, which is a general C library, and MRF (Mapped Read Format), which contains a set of modules to analyze RNA-Seq data sets.
Source code & Executables
A TAR ball that contains the source code for these two components, as well as statically built binaries for UNIX and Mac OS, can be found in RSEQtools' Github repository, which can be cloned from the following URL:
The components should be installed in the same order as listed above. Installation instructions can be found at the respective website.
Important Note ============== THIS PACKAGE (RSEQtools including BIOS and MRF) IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
License information
The software package is released under the Creative Commons license (Attribution-NonCommerical).
For more details please refer to the Permissions Page on the Gerstein Lab webpage.
