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[http://molmovdb.org/molmovdb/morph Morph Server] generates a plausible pathway between two conformations of a protein or nucleic acid structure. A large number of statistics and several high-quality movies are output.
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Please refer to the [[Resources]] page.
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[http://bioinfo.mbb.yale.edu/ExpressYourself ExpressYourself] is an interactive platform for background correction, normalization, scoring, and quality assessment of raw microarray data.
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[http://spine.nesg.org SPINE] is our laboratory-information management system (LIMS) for the [http://www.nesg.org NorthEast Structural Genomics Consortium]. The online version is restricted to consortium users, but most of the code is freely available for download.<br>
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[http://pseudogene.org Pseudogene.org] is a collection of resources related to our efforts to survey eukaryotic genomes for pseudogene sequences, "pseudo-fold" usage, amino-acid composition, and single-nucleotide polymorphisms (SNPs) to help elucidate the relationships between pseudogene families across several
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organisms.
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[http://tiling.gersteinlab.org Tiling] is under construction.
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[http://networks.gersteinlab.org/genome/interactions/networks/ TopNet] is an automated web tool designed to calculate topological parameters and compare different sub-networks for any given network.
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A number of programs for calculating properties of protein and nucleic
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acid structures have been collected into a [http://geometry.molmovdb.org single distribution].  Included are a library of utility functions for dealing
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with structures, and a convenient interactive command-line interpreter.
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A new algorithm for [http://bioinfo.mbb.yale.edu/expression/cluster local clustering of expression data] to find timeshifted and/or inverted
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relationships is available as C source code.
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Latest revision as of 14:50, 5 May 2014

Please refer to the Resources page.

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