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<TABLE CELLPADDING="0">
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Please refer to the [[Resources]] page.
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<TR>
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<TD CLASS="bg">
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<TABLE CELLPADDING="8" CELLSPACING="1">
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<TR>
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<TD CLASS="image" VALIGN="middle">
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<A CLASS="image" HREF="http://molmovdb.org/molmovdb/morph">
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<IMG SRC="./images/morph-icon.jpg" ALT="Morph Server"></A>
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</TD>
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<TD CLASS="description">
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The <A CLASS="resource"
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HREF="http://molmovdb.org/molmovdb/morph">Morph Server</A>
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generates
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a plausible pathway between two conformations of a protein or nucleic acid
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structure.
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A large number of statistics and several high-quality movies are
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output.<br>
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<SMALL>[ <A HREF="/papers/morphs-nar">citation 1</A> | <A
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HREF="/papers/molmovdb2">citation2</A> |
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<A HREf="/papers/subject/motions">related</A> ]</SMALL>
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</TD>
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</TR>
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<TR>
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<TD CLASS="image" VALIGN="middle">
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<A CLASS="image" HREF="http://bioinfo.mbb.yale.edu/ExpressYourself">
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<IMG SRC="./images/express-logo.png" ALT="ExpressYourself"></A>
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</TD>
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<TD CLASS="description">
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<A CLASS="resource" HREF="http://bioinfo.mbb.yale.edu/ExpressYourself">ExpressYourself</A> is an
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interactive platform for
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background correction, normalization, scoring, and quality assessment of
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raw microarray data.<br>
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<SMALL>[ <A HREf="/papers/expressyourself">citation</A> ]</SMALL>
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</TD>
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</TR>
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<TR>
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<TD CLASS="image" VALIGN="middle">
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<A CLASS="image" HREF="http://spine.nesg.org">
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<IMG SRC="./images/spine-icon.jpg" ALT="SPINE"></A>
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</TD>
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<TD CLASS="description">
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<A CLASS="resource" HREF="http://spine.nesg.org">SPINE</A> is our
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laboratory-information management
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system (LIMS) for the <A CLASS="resource"
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HREf="http://www.nesg.org">NorthEast Structural Genomics
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Consortium</A>.  The online version is restricted to consortium users, but
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most of the code is
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freely available for download.<br>
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<SMALL>[ <A HREF="/papers/spine-nar">citation1</A> | <A
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HREF="/papers/spine2-nar">citation2</A> ]</SMALL>
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</TD>
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</TR>
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<TR>
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<TD CLASS="image" VALIGN="middle">
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<A CLASS="image" HREF="http://pseudogene.org">
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<IMG SRC="./images/pseudogene.png" ALT="Pseudogenes"></A>
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</TD>
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<TD CLASS="description">
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<a class="resource" href="http://pseudogene.org">Pseudogene.org</a>
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is a collection of resources related to our efforts to survey
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eukaryotic genomes for pseudogene sequences, "pseudo-fold" usage,
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amino-acid composition, and single-nucleotide polymorphisms (SNPs) to help
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elucidate the relationships between pseudogene families across several
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organisms.
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</TD>
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</TR>
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<TR>
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<TD CLASS="image" VALIGN="middle">
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<A CLASS="image" HREF="http://tiling.gersteinlab.org/">
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<IMG SRC="./images/tiling.png" ALT="Tiling"></A>
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</TD>
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<TD CLASS="description">
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<a class="resource" href="http://tiling.gersteinlab.org/">Tiling</a>
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is under construction.
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</TD>
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</TR>
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<TR>
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<TD CLASS="image" VALIGN="middle">
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<A CLASS="image" HREF="http://networks.gersteinlab.org/genome/interactions/networks/">
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<IMG SRC="./images/topnet.png" ALT="TopNet"></A>
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</TD>
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<TD CLASS="description">
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<a class="resource" href="http://networks.gersteinlab.org/genome/interactions/networks/">TopNet</a>
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is an automated web tool designed to calculate topological
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parameters and compare different sub-networks for any given network.
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</TD>
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</TR>
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<TR>
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<TD CLASS="image" VALIGN="middle">
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<A CLASS="image" HREF="http://geometry.molmovdb.org">
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<IMG SRC="./images/volume.png" ALT="Protein Geometry"></A>
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</TD>
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<TD CLASS="description">
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A number of programs for calculating properties of protein and nucleic
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acid structures have
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been collected into a <A CLASS="resource"
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HREF="http://geometry.molmovdb.org">single
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distribution</A>.  Included are a library of utility functions for dealing
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with structures,
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and a convenient interactive command-line interpreter.
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<SMALL>[ <A HREF="/papers/subject/volumes">related papers</A> ]</SMALL>
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</TD>
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</TR>
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<TR>
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<TD CLASS="image" VALIGN="middle">
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<A CLASS="image" HREF="http://bioinfo.mbb.yale.edu/expression/cluster">
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<IMG SRC="./images/timeshift.png" ALT="Local Clustering"></A>
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</TD>
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<TD CLASS="description">
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A new algorithm for <A CLASS="resource" HREF="http://bioinfo.mbb.yale.edu/expression/cluster">local
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clustering of expression data</A> to find timeshifted and/or inverted
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relationships is available as C source code.
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<SMALL>[ <A HREF="/papers/timeshift-jmb">citation</A> ]</SMALL>
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</TD>
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</TR>
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<TR>
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<TD CLASS="image" VALIGN="middle">
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<A CLASS="image" HREF="/papers/xml/">
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<IMG SRC="./images/papers.png" ALT="Papers"></A>
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</TD>
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<TD CLASS="description">
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The <A CLASS="resource" HREF="/papers">publication listings</A> on our
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site are automatically
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generated based on data from the NCBI and local annotations stored in XML
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format.  The <A CLASS="resource" HREF="/papers/xml">code</A> which does
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this is freely available
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(some modification will be required for other sites).
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</TD>
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</TR>
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</TABLE>
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</TD></TR>
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</TABLE>
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Latest revision as of 14:50, 5 May 2014

Please refer to the Resources page.

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