Overview of the 2012 ENCODE Rollout
From GersteinInfo
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== Grants == | == Grants == | ||
* For the current ENCODE "build out", we are part of the [http://projectreporter.nih.gov/project_info_description.cfm?aid=8402447 data analysis grant] | * For the current ENCODE "build out", we are part of the [http://projectreporter.nih.gov/project_info_description.cfm?aid=8402447 data analysis grant] | ||
| - | * For the scale up, we had 3 NIH | + | * For modENCODE, we are part of the modENCODE Data Analysis Center (DAC) ([http://projectreporter.nih.gov/project_info_description.cfm?projectnumber=1RC2HG005639-01 NIH-modencode-DAC]) |
| + | * For the ENCODE scale up, we had 3 NIH grants | ||
** GENCODE ([http://papers.gersteinlab.org/subject/encode-pgenes NIH-encode-pgenes]) | ** GENCODE ([http://papers.gersteinlab.org/subject/encode-pgenes NIH-encode-pgenes]) | ||
** The ENCODE Data Analysis Center (DAC) ([http://projectreporter.nih.gov/project_info_description.cfm?aid=8107695 NIH-encode-DAC]) | ** The ENCODE Data Analysis Center (DAC) ([http://projectreporter.nih.gov/project_info_description.cfm?aid=8107695 NIH-encode-DAC]) | ||
** The ENCODE "chip center" ([http://projectreporter.nih.gov/project_info_description.cfm?aid=8325805 NIH-encode-chip]) | ** The ENCODE "chip center" ([http://projectreporter.nih.gov/project_info_description.cfm?aid=8325805 NIH-encode-chip]) | ||
| - | |||
* For the initial ENCODE pilot, we had one grant ([http://papers.gersteinlab.org/subject/encode papers], [http://encode.gersteinlab.org website]). | * For the initial ENCODE pilot, we had one grant ([http://papers.gersteinlab.org/subject/encode papers], [http://encode.gersteinlab.org website]). | ||
Revision as of 14:47, 11 October 2012
The rollout for the ENCODE consortium (Human Genome Annotation) papers occurred in early fall 2012. This was the culmination of a decade of work in the ENCODE scaleup, the ENCODE pilot project, and modENCODE.
Contents |
Papers
- Papers related to the 2012 ENCODE rollout
- Papers related to the 2010 modENCODE rollout
- Papers related to the 2007 ENCODE pilot rollout
- Other ENCODE associated papers
- Gencode pseudogenes work
Press
- NY Times and Reuters articles on the ENCODE rollout
- Other key articles that describe the lab's work on the rollout
- Even more articles about the rollout (including a subset of them specifically mentioning the lab) and a comprehensive OpenHelix Blog entry that has lots of annotated press links
- Yale Press Releases on ENCODE (written by Bill Hathaway)
- including a schematic showing a key point of ENCODE networks analysis: annotation to hairball to interpretable hierarchy
Talks
- Slide pack on networks and pseudogenes (pdf & ppt)
- Another slide pack containing information on statistical models relating output expression to genomic inputs (pdf & ppt)
- Finally, here's a link to the modENCODE symposium, which has a video containing bits of the talks above
Subway Map
We have created a subway map figure (pdf) showing the overall collaboration in the consortium (gdoc). There are now coauthor networks labeled/colored by both country and state.
Introductory Papers
These introductory papers are easy to read and provide context on the ENCODE rollout.
- The ENCODE (ENCyclopedia Of DNA Elements) Project Science (2004)
- The real life of pseudogenes American Scientist (2006)
- Genomics Confounds Gene Classification American Scientist (2008)
Grants
- For the current ENCODE "build out", we are part of the data analysis grant
- For modENCODE, we are part of the modENCODE Data Analysis Center (DAC) (NIH-modencode-DAC)
- For the ENCODE scale up, we had 3 NIH grants
- GENCODE (NIH-encode-pgenes)
- The ENCODE Data Analysis Center (DAC) (NIH-encode-DAC)
- The ENCODE "chip center" (NIH-encode-chip)
- For the initial ENCODE pilot, we had one grant (papers, website).
Misc
Hartford Courant article about how Connecticut is aiming to become a genomics hub. Adjacent to the story was a timeline highlighting the major genomic achievements in the state.
An article in Spanish about the ENCODE rollout.
