Overview of the 2012 ENCODE Rollout
From GersteinInfo
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== Papers == | == Papers == | ||
* Papers related to the 2012 [http://papers.gersteinlab.org/subject/encoderollout ENCODE rollout] | * Papers related to the 2012 [http://papers.gersteinlab.org/subject/encoderollout ENCODE rollout] | ||
| + | [[File:cover_nature_encoderollout.jpg|100px|link=http://www.nature.com/nature/journal/v489/n7414/index.html]] [[File:cover_genomeres_encoderollout.png|100px|link=http://genome.cshlp.org/content/22/9.toc]] | ||
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* Papers related to the 2010 [http://papers.gersteinlab.org/subject/modencode modENCODE rollout] | * Papers related to the 2010 [http://papers.gersteinlab.org/subject/modencode modENCODE rollout] | ||
| + | [[File:cover_science_modencode.png|100px|link=http://www.sciencemag.org/content/330/6012.toc]] [[File:cover_genomeres_modencode.png|100px|link=http://genome.cshlp.org/content/21/2.toc]] | ||
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* Papers related to the 2007 [http://papers.gersteinlab.org/subject/encodecore ENCODE pilot rollout] | * Papers related to the 2007 [http://papers.gersteinlab.org/subject/encodecore ENCODE pilot rollout] | ||
| + | [[File:cover_nature_encodepilot.jpg|100px|link=http://www.nature.com/nature/journal/v447/n7146/]] [[File:cover_genomeres_encodepilot.png|100px|link=http://genome.cshlp.org/content/17/6.toc]] | ||
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* [http://papers.gersteinlab.org/subject/otherencodepapers Other ENCODE associated papers] | * [http://papers.gersteinlab.org/subject/otherencodepapers Other ENCODE associated papers] | ||
* [http://papers.gersteinlab.org/subject/encode-pgenes Gencode pseudogenes work] | * [http://papers.gersteinlab.org/subject/encode-pgenes Gencode pseudogenes work] | ||
Revision as of 21:13, 10 October 2012
The rollout for the ENCODE consortium (Human Genome Annotation) papers occurred in early fall 2012. This was the culmination of a decade of work in the ENCODE scaleup, the ENCODE pilot project, and modENCODE.
Contents |
Papers
- Papers related to the 2012 ENCODE rollout
- Papers related to the 2010 modENCODE rollout
- Papers related to the 2007 ENCODE pilot rollout
Press
- NY Times article on ENCODE
- Occupy comes to DNA: A genome for the 99 percent - Reuters article that uses Mark's comment in its title
- other key articles that describe the Gerstein lab's work on the rollout
- More articles about the ENCODE rollout and an OpenHelix Blog entry that has lots of press links
- NHGRI press release on ENCODE
- Yale Press Releases on ENCODE (written by Bill Hathaway)
- including a schematic showing a key point of ENCODE networks analysis: annotation to hairball to interpretable hierarchy
Talks
- Slide pack on networks and pseudogenes (pdf & ppt)
- Another slide pack containing information on statistical models relating output expression to genomic inputs (pdf & ppt)
- Finally, here's a link to the modENCODE symposium, which has a video containing bits of the talks above
Subway Map
We have created a subway map figure (pdf) showing the overall collaboration in the consortium (gdoc). There are now coauthor networks labeled/colored by both country and state.
Introductory Papers
These introductory papers are easy to read and provide context on the ENCODE rollout.
- The ENCODE (ENCyclopedia Of DNA Elements) Project Science (2004)
- The real life of pseudogenes American Scientist (2006)
- Genomics Confounds Gene Classification American Scientist (2008)
Grants
We had 3 NIH ENCODE grants
- GENCODE (NIH-encode-pgenes)
- The ENCODE Data Analysis Center (NIH-encode-DAC)
- The ENCODE "chip center" (NIH-encode-chip)
in addition to the original pilot grant (papers, website).
Misc
Hartford Courant article about how Connecticut is aiming to become a genomics hub. Adjacent to the story was a timeline highlighting the major genomic achievements in the state.
An article in Spanish about the ENCODE rollout.
