PEC package preprints - Revision history

Mbg at 19:01, 22 February 2020

2020-02-22T19:01:18Z

← Older revision		Revision as of 19:01, 22 February 2020
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	This is the page gives an overview of the Yale contribution to Dec. '18 PsychENCODE rollout.		This is the page gives an overview of the Yale contribution to Dec. '18 PsychENCODE rollout.

			[[testredirect]]

	(This is a '''"private page"''' to those who have the link. Please do NOT redistribute material on this page without explicit permission.)		(This is a '''"private page"''' to those who have the link. Please do NOT redistribute material on this page without explicit permission.)

Mbg at 15:43, 9 December 2018

2018-12-09T15:43:08Z

← Older revision		Revision as of 15:43, 9 December 2018
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	**'''One page summary''': [https://www.dropbox.com/s/z3rotgy5nx5hrg7/aat8464_summary_revised.pdf?dl=0 '''Proofs'''], [http://files.gersteinlab.org/public-docs/2018/11.20/capstone4-summary-text.pdf Text], [http://files.gersteinlab.org/public-docs/2018/12.05/capstone4-summary-graphic-Screenshot.png Figure]		**'''One page summary''': [https://www.dropbox.com/s/z3rotgy5nx5hrg7/aat8464_summary_revised.pdf?dl=0 '''Proofs'''], [http://files.gersteinlab.org/public-docs/2018/11.20/capstone4-summary-text.pdf Text], [http://files.gersteinlab.org/public-docs/2018/12.05/capstone4-summary-graphic-Screenshot.png Figure]
	**Fun pics of cell-type specfic regulatory networks, based on single-cell data ([https://www.dropbox.com/s/ttnoefsjmux79kn/celltype_GRN_forpress.jpg?dl=0 Big JPEG Wheel]) ([http://files.gersteinlab.org/public-docs/2018/12.05/CellType_Rasterized.pdf PDF blow-ups])		**Fun pics of cell-type specfic regulatory networks, based on single-cell data ([https://www.dropbox.com/s/ttnoefsjmux79kn/celltype_GRN_forpress.jpg?dl=0 Big JPEG Wheel]) ([http://files.gersteinlab.org/public-docs/2018/12.05/CellType_Rasterized.pdf PDF blow-ups])
	**Lectures on the Adult Capstone [http://lectures.gersteinlab.org/summary/Using-population-scale-functional-genomics-mental-disease-n-exploiting-data-exhaust-20181025-i0sigma/ i0sigma], [http://lectures.gersteinlab.org/summary/Pop-scale-genomics-for-mental-disease-n-privacy-risks--20180921-i0mssm18/ i0mssm18]		**Lectures on the Adult Capstone: [http://lectures.gersteinlab.org/summary/Using-population-scale-functional-genomics-mental-disease-n-exploiting-data-exhaust-20181025-i0sigma/ i0sigma], [http://lectures.gersteinlab.org/summary/Pop-scale-genomics-for-mental-disease-n-privacy-risks--20180921-i0mssm18/ i0mssm18]
	**[http://resource.psychencode.org/ '''Resource'''.psychencode.org]		**[http://resource.psychencode.org/ '''Resource'''.psychencode.org]

Mbg: /* Capstone papers from Yale */

2018-12-09T15:42:52Z

Capstone papers from Yale

← Older revision		Revision as of 15:42, 9 December 2018
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	**'''One page summary''': [https://www.dropbox.com/s/z3rotgy5nx5hrg7/aat8464_summary_revised.pdf?dl=0 '''Proofs'''], [http://files.gersteinlab.org/public-docs/2018/11.20/capstone4-summary-text.pdf Text], [http://files.gersteinlab.org/public-docs/2018/12.05/capstone4-summary-graphic-Screenshot.png Figure]		**'''One page summary''': [https://www.dropbox.com/s/z3rotgy5nx5hrg7/aat8464_summary_revised.pdf?dl=0 '''Proofs'''], [http://files.gersteinlab.org/public-docs/2018/11.20/capstone4-summary-text.pdf Text], [http://files.gersteinlab.org/public-docs/2018/12.05/capstone4-summary-graphic-Screenshot.png Figure]
	**Fun pics of cell-type specfic regulatory networks, based on single-cell data ([https://www.dropbox.com/s/ttnoefsjmux79kn/celltype_GRN_forpress.jpg?dl=0 Big JPEG Wheel]) ([http://files.gersteinlab.org/public-docs/2018/12.05/CellType_Rasterized.pdf PDF blow-ups])		**Fun pics of cell-type specfic regulatory networks, based on single-cell data ([https://www.dropbox.com/s/ttnoefsjmux79kn/celltype_GRN_forpress.jpg?dl=0 Big JPEG Wheel]) ([http://files.gersteinlab.org/public-docs/2018/12.05/CellType_Rasterized.pdf PDF blow-ups])
	**Lectures on the Adult Capstone [http://lectures.gersteinlab.org/summary/Using-population-scale-functional-genomics-mental-disease-n-exploiting-data-exhaust-20181025-i0sigma/ i0sigma],		**Lectures on the Adult Capstone [http://lectures.gersteinlab.org/summary/Using-population-scale-functional-genomics-mental-disease-n-exploiting-data-exhaust-20181025-i0sigma/ i0sigma], [http://lectures.gersteinlab.org/summary/Pop-scale-genomics-for-mental-disease-n-privacy-risks--20180921-i0mssm18/ i0mssm18]
	[http://lectures.gersteinlab.org/summary/Pop-scale-genomics-for-mental-disease-n-privacy-risks--20180921-i0mssm18/ i0mssm18]
	**[http://resource.psychencode.org/ '''Resource'''.psychencode.org]		**[http://resource.psychencode.org/ '''Resource'''.psychencode.org]

Mbg: /* Capstone papers from Yale */

2018-12-09T15:42:13Z

Capstone papers from Yale

← Older revision		Revision as of 15:42, 9 December 2018
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	**'''One page summary''': [https://www.dropbox.com/s/z3rotgy5nx5hrg7/aat8464_summary_revised.pdf?dl=0 '''Proofs'''], [http://files.gersteinlab.org/public-docs/2018/11.20/capstone4-summary-text.pdf Text], [http://files.gersteinlab.org/public-docs/2018/12.05/capstone4-summary-graphic-Screenshot.png Figure]		**'''One page summary''': [https://www.dropbox.com/s/z3rotgy5nx5hrg7/aat8464_summary_revised.pdf?dl=0 '''Proofs'''], [http://files.gersteinlab.org/public-docs/2018/11.20/capstone4-summary-text.pdf Text], [http://files.gersteinlab.org/public-docs/2018/12.05/capstone4-summary-graphic-Screenshot.png Figure]
	**Fun pics of cell-type specfic regulatory networks, based on single-cell data ([https://www.dropbox.com/s/ttnoefsjmux79kn/celltype_GRN_forpress.jpg?dl=0 Big JPEG Wheel]) ([http://files.gersteinlab.org/public-docs/2018/12.05/CellType_Rasterized.pdf PDF blow-ups])		**Fun pics of cell-type specfic regulatory networks, based on single-cell data ([https://www.dropbox.com/s/ttnoefsjmux79kn/celltype_GRN_forpress.jpg?dl=0 Big JPEG Wheel]) ([http://files.gersteinlab.org/public-docs/2018/12.05/CellType_Rasterized.pdf PDF blow-ups])
			**Lectures on the Adult Capstone [http://lectures.gersteinlab.org/summary/Using-population-scale-functional-genomics-mental-disease-n-exploiting-data-exhaust-20181025-i0sigma/ i0sigma],
			[http://lectures.gersteinlab.org/summary/Pop-scale-genomics-for-mental-disease-n-privacy-risks--20180921-i0mssm18/ i0mssm18]
	**[http://resource.psychencode.org/ '''Resource'''.psychencode.org]		**[http://resource.psychencode.org/ '''Resource'''.psychencode.org]

Mbg: /* Capstone papers from Yale */

2018-12-07T14:36:28Z

Capstone papers from Yale

← Older revision		Revision as of 14:36, 7 December 2018
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	== Capstone papers from Yale==		== Capstone papers from Yale==
	*Developmental Capstone - [http://files.gersteinlab.org/public-docs/2018/11.19/Li_S18_aat7615_Combined.pdf '''Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk''']		*Developmental Capstone - [http://files.gersteinlab.org/public-docs/2018/11.19/Li_S18_aat7615_Combined.pdf '''Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk''']
	**[http://development.psychencode.org/ Development.psychencode.org]		**[http://development.psychencode.org/ Development.psychencode.org] & [http://brainspan.org/ BrainSpan.org]
	*Adult Capstone - [http://files.gersteinlab.org/public-docs/2018/11.20/Wang_S18_aat8464_Combined_nofig.pdf '''Comprehensive functional genomic resource and integrative model for the human brain''']		*Adult Capstone - [http://files.gersteinlab.org/public-docs/2018/11.20/Wang_S18_aat8464_Combined_nofig.pdf '''Comprehensive functional genomic resource and integrative model for the human brain''']
	**Main text: [https://www.dropbox.com/s/pm08ztoffxvg603/aat8464_galley_revised.pdf?dl=0 '''Proofs'''], [http://files.gersteinlab.org/public-docs/2018/12.05/Wang_S18_aat8464_Combined_fig_resized2.pdf Figures]		**Main text: [https://www.dropbox.com/s/pm08ztoffxvg603/aat8464_galley_revised.pdf?dl=0 '''Proofs'''], [http://files.gersteinlab.org/public-docs/2018/12.05/Wang_S18_aat8464_Combined_fig_resized2.pdf Figures]

Mbg at 05:50, 7 December 2018

2018-12-07T05:50:00Z

← Older revision		Revision as of 05:50, 7 December 2018
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	This is the page gives an overview of the Yale contribution to Dec. '18 PsychENCODE rollout. (This is a "private page" to those who have the link.)		This is the page gives an overview of the Yale contribution to Dec. '18 PsychENCODE rollout.

			(This is a '''"private page"''' to those who have the link. Please do NOT redistribute material on this page without explicit permission.)
	== PsychENCODE introduction ==		== PsychENCODE introduction ==
	*[http://files.gersteinlab.org/public-docs/2018/11.29/aaw0544_ArticleContent-further-suggestions-28nov18.notrk.docx Draft of introduction as of 28-Nov.]		*[http://files.gersteinlab.org/public-docs/2018/11.29/aaw0544_ArticleContent-further-suggestions-28nov18.notrk.docx Draft of introduction as of 28-Nov.]

Mbg: /* Capstone papers from Yale */

2018-12-07T04:02:17Z

Capstone papers from Yale

← Older revision		Revision as of 04:02, 7 December 2018
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	*Developmental Capstone - [http://files.gersteinlab.org/public-docs/2018/11.19/Li_S18_aat7615_Combined.pdf '''Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk''']		*Developmental Capstone - [http://files.gersteinlab.org/public-docs/2018/11.19/Li_S18_aat7615_Combined.pdf '''Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk''']
	**[http://development.psychencode.org/ Development.psychencode.org]		**[http://development.psychencode.org/ Development.psychencode.org]
	*Adult Capstone - [http://files.gersteinlab.org/public-docs/2018/11.20/Wang_S18_aat8464_Combined_nofig.pdf '''Comprehensive functional genomic resource and integrative model for the human brain''']		*Adult Capstone - [http://files.gersteinlab.org/public-docs/2018/11.20/Wang_S18_aat8464_Combined_nofig.pdf '''Comprehensive functional genomic resource and integrative model for the human brain''']
	**Main text [http://files.gersteinlab.org/public-docs/2018/12.05/Wang_S18_aat8464_Combined_fig_resized2.pdf '''~~Figures~~''']		**Main text: [https://www.dropbox.com/s/pm08ztoffxvg603/aat8464_galley_revised.pdf?dl=0 '''Proofs'''], [http://files.gersteinlab.org/public-docs/2018/12.05/Wang_S18_aat8464_Combined_fig_resized2.pdf Figures]
	**[http://files.gersteinlab.org/public-docs/2018/11.20/capstone4-summary-text.pdf ~~'''One page summary'''~~] ~~(Summary~~ [http://files.gersteinlab.org/public-docs/2018/12.05/capstone4-summary-graphic-Screenshot.png Figure])		**'''One page summary''': [https://www.dropbox.com/s/z3rotgy5nx5hrg7/aat8464_summary_revised.pdf?dl=0 '''Proofs'''], [http://files.gersteinlab.org/public-docs/2018/11.20/capstone4-summary-text.pdf Text], [http://files.gersteinlab.org/public-docs/2018/12.05/capstone4-summary-graphic-Screenshot.png Figure]
	**Fun pics of cell-type specfic regulatory networks, based on single-cell data ([https://www.dropbox.com/s/ttnoefsjmux79kn/celltype_GRN_forpress.jpg?dl=0 Big JPEG Wheel]) ([http://files.gersteinlab.org/public-docs/2018/12.05/CellType_Rasterized.pdf PDF blow-ups])		**Fun pics of cell-type specfic regulatory networks, based on single-cell data ([https://www.dropbox.com/s/ttnoefsjmux79kn/celltype_GRN_forpress.jpg?dl=0 Big JPEG Wheel]) ([http://files.gersteinlab.org/public-docs/2018/12.05/CellType_Rasterized.pdf PDF blow-ups])
	**[http://resource.psychencode.org/ Resource.psychencode.org]		**[http://resource.psychencode.org/ '''Resource'''.psychencode.org]

	== Other Yale papers ==		== Other Yale papers ==

Mbg at 03:50, 7 December 2018

2018-12-07T03:50:47Z

← Older revision		Revision as of 03:50, 7 December 2018
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	**[http://files.gersteinlab.org/public-docs/2018/11.20/Amiri_S18_aat6720_OnePageSummary.pdf '''One page summary''']		**[http://files.gersteinlab.org/public-docs/2018/11.20/Amiri_S18_aat6720_OnePageSummary.pdf '''One page summary''']
	*[http://files.gersteinlab.org/public-docs/2018/11.19/Zhu_S18_aat8077_CombinedPDF_v6.pdf '''Spatiotemporal transcriptomic divergence across human and macaque brain development''']		*[http://files.gersteinlab.org/public-docs/2018/11.19/Zhu_S18_aat8077_CombinedPDF_v6.pdf '''Spatiotemporal transcriptomic divergence across human and macaque brain development''']
			**[http://evolution.psychencode.org/ Evolution.psychencode.org]
	==Listing of all the Papers in Science==		==Listing of all the Papers in Science==
	*Capstones		*Capstones

Mbg at 03:47, 7 December 2018

2018-12-07T03:47:33Z

← Older revision		Revision as of 03:47, 7 December 2018
Line 1:		Line 1:
	This is the page gives an overview of the Yale contribution to Dec. '18 PsychENCODE rollout. (This is a "private page" to those who have the link.)		This is the page gives an overview of the Yale contribution to Dec. '18 PsychENCODE rollout. (This is a "private page" to those who have the link.)
	== PsychENCODE introduction ==		== PsychENCODE introduction ==
	*[http://files.gersteinlab.org/public-docs/2018/11.29/aaw0544_ArticleContent-further-suggestions-28nov18.notrk.docx ~~''Introduction (draft~~ as of 28-Nov.~~)'']~~		*[http://files.gersteinlab.org/public-docs/2018/11.29/aaw0544_ArticleContent-further-suggestions-28nov18.notrk.docx Draft of introduction as of 28-Nov.]
	**[http://development.psychencode.org/ Development.psychencode.org]
	== Capstone papers from Yale==		== Capstone papers from Yale==
	*Developmental Capstone - [http://files.gersteinlab.org/public-docs/2018/11.19/Li_S18_aat7615_Combined.pdf '''Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk''']		*Developmental Capstone - [http://files.gersteinlab.org/public-docs/2018/11.19/Li_S18_aat7615_Combined.pdf '''Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk''']
			**[http://development.psychencode.org/ Development.psychencode.org]
	*Adult Capstone - [http://files.gersteinlab.org/public-docs/2018/11.20/Wang_S18_aat8464_Combined_nofig.pdf '''Comprehensive functional genomic resource and integrative model for the human brain''']		*Adult Capstone - [http://files.gersteinlab.org/public-docs/2018/11.20/Wang_S18_aat8464_Combined_nofig.pdf '''Comprehensive functional genomic resource and integrative model for the human brain''']
	**Main text [http://files.gersteinlab.org/public-docs/2018/12.05/Wang_S18_aat8464_Combined_fig_resized2.pdf '''Figures''']		**Main text [http://files.gersteinlab.org/public-docs/2018/12.05/Wang_S18_aat8464_Combined_fig_resized2.pdf '''Figures''']

Mbg at 03:46, 7 December 2018

2018-12-07T03:46:13Z

← Older revision		Revision as of 03:46, 7 December 2018
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	== PsychENCODE introduction ==		== PsychENCODE introduction ==
	*[http://files.gersteinlab.org/public-docs/2018/11.29/aaw0544_ArticleContent-further-suggestions-28nov18.notrk.docx ''Introduction (draft as of 28-Nov.)'']		*[http://files.gersteinlab.org/public-docs/2018/11.29/aaw0544_ArticleContent-further-suggestions-28nov18.notrk.docx ''Introduction (draft as of 28-Nov.)'']
			**[http://development.psychencode.org/ Development.psychencode.org]
	== Capstone papers from Yale==		== Capstone papers from Yale==
	*Developmental Capstone - [http://files.gersteinlab.org/public-docs/2018/11.19/Li_S18_aat7615_Combined.pdf '''Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk''']		*Developmental Capstone - [http://files.gersteinlab.org/public-docs/2018/11.19/Li_S18_aat7615_Combined.pdf '''Integrative Functional Genomic Analysis of Human Brain Development and Neuropsychiatric Risk''']

	*Adult Capstone - [http://files.gersteinlab.org/public-docs/2018/11.20/Wang_S18_aat8464_Combined_nofig.pdf '''Comprehensive functional genomic resource and integrative model for the human brain''']		*Adult Capstone - [http://files.gersteinlab.org/public-docs/2018/11.20/Wang_S18_aat8464_Combined_nofig.pdf '''Comprehensive functional genomic resource and integrative model for the human brain''']
	**Main text [http://files.gersteinlab.org/public-docs/2018/12.05/Wang_S18_aat8464_Combined_fig_resized2.pdf '''Figures''']		**Main text [http://files.gersteinlab.org/public-docs/2018/12.05/Wang_S18_aat8464_Combined_fig_resized2.pdf '''Figures''']
	**[http://files.gersteinlab.org/public-docs/2018/11.20/capstone4-summary-text.pdf '''One page summary'''] (Summary [http://files.gersteinlab.org/public-docs/2018/12.05/capstone4-summary-graphic-Screenshot.png Figure])		**[http://files.gersteinlab.org/public-docs/2018/11.20/capstone4-summary-text.pdf '''One page summary'''] (Summary [http://files.gersteinlab.org/public-docs/2018/12.05/capstone4-summary-graphic-Screenshot.png Figure])
	**Fun pics of cell-type specfic regulatory networks, based on single-cell data ([https://www.dropbox.com/s/ttnoefsjmux79kn/celltype_GRN_forpress.jpg?dl=0 Big JPEG Wheel]) ([http://files.gersteinlab.org/public-docs/2018/12.05/CellType_Rasterized.pdf PDF blow-ups])		**Fun pics of cell-type specfic regulatory networks, based on single-cell data ([https://www.dropbox.com/s/ttnoefsjmux79kn/celltype_GRN_forpress.jpg?dl=0 Big JPEG Wheel]) ([http://files.gersteinlab.org/public-docs/2018/12.05/CellType_Rasterized.pdf PDF blow-ups])
			**[http://resource.psychencode.org/ Resource.psychencode.org]

	== Other Yale papers ==		== Other Yale papers ==